******Results of the Case-control Quasi-likelihood score test******

Phenotype information is available for 180 individuals from 60 independent families

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Analysis of Marker 1 

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71 cases and 109 controls available

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allele frequency estimates using naive counting in
		 cases 		 controls 		  all sample 
allele 1 : freq = 0.1901	 freq = 0.2431		 freq = 0.2222
allele 2 : freq = 0.8099	 freq = 0.7569		 freq = 0.7778

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allele frequency estimates using the allele based quasi-likelihood estimator in
			 cases 			 controls 			 all sample 
allele 1 : freq = 0.2010  sd = 0.0410	 freq = 0.2422  sd = 0.0363		 freq = 0.2222  sd = 0.0310
allele 2 : freq = 0.7990  sd = 0.0410	 freq = 0.7578  sd = 0.0363		 freq = 0.7778  sd = 0.0310

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Case-control corrected chi2 test 

Corrected chi2 statistic value = 1.132987	 pvalue = 0.287139  df = 1

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Case-control quasi-likelihood score test 

CC-QL statistic value = 0.570311	 pvalue = 0.450135  df = 1