******Results of the Case-control Quasi-likelihood score test****** Phenotype information is available for 300 individuals from 1 independent families **************************************** Analysis of Marker 1 **************************************** 117 cases and 183 controls available ***************************************** allele frequency estimates using naive counting in cases controls all sample allele 1 : freq = 0.1795 freq = 0.2322 freq = 0.2117 allele 2 : freq = 0.8205 freq = 0.7678 freq = 0.7883 ***************************************** allele frequency estimates using the allele based quasi-likelihood estimator in cases controls all sample allele 1 : freq = 0.1714 sd = 0.0792 freq = 0.2057 sd = 0.0815 freq = 0.1740 sd = 0.0749 allele 2 : freq = 0.8286 sd = 0.0792 freq = 0.7943 sd = 0.0815 freq = 0.8260 sd = 0.0749 ***************************************** Case-control corrected chi2 test Corrected chi2 statistic value = 1.434105 pvalue = 0.231096 df = 1 ***************************************** Case-control quasi-likelihood score test CC-QL statistic value = 3.214291 pvalue = 0.072998 df = 1 **************************************** Analysis of Marker 2 **************************************** 117 cases and 183 controls available ***************************************** allele frequency estimates using naive counting in cases controls all sample allele 1 : freq = 0.0427 freq = 0.0984 freq = 0.0767 allele 2 : freq = 0.2949 freq = 0.2951 freq = 0.2950 allele 3 : freq = 0.2991 freq = 0.2322 freq = 0.2583 allele 4 : freq = 0.3632 freq = 0.3743 freq = 0.3700 ***************************************** allele frequency estimates using the allele based quasi-likelihood estimator in cases controls all sample allele 1 : freq = 0.0580 sd = 0.0491 freq = 0.1356 sd = 0.0690 freq = 0.1179 sd = 0.0638 allele 2 : freq = 0.2391 sd = 0.0896 freq = 0.2423 sd = 0.0864 freq = 0.2414 sd = 0.0846 allele 3 : freq = 0.2882 sd = 0.0952 freq = 0.2469 sd = 0.0869 freq = 0.2493 sd = 0.0855 allele 4 : freq = 0.4147 sd = 0.1035 freq = 0.3753 sd = 0.0976 freq = 0.3913 sd = 0.0965 ***************************************** Case-control corrected chi2 test Corrected chi2 statistic value = 4.988932 pvalue = 0.172609 df = 3 ***************************************** Case-control quasi-likelihood score test CC-QL statistic value = 2.705440 pvalue = 0.439304 df = 3